Tuesday, February 14, 2012
get rRNA.gtf file from UCSC Table Browser
You can get this pretty easily from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables).
Select "All Tables" from the group drop-down list
Select the "rmsk" table from the table drop-down list
Choose "GTF" as the output format
Type a filename in "output file" so your browser downloads the result
Click "create" next to filter
Next to "repClass," type rRNA
Next to free-form query, select "OR" and type repClass = "tRNA"
Click submit on that page, then get output on the main page